Lectures

BiomeFUN 2025 - Belgrade

Basics of Python

Download the starter Jupyter Notebook below to experiment with some simple Python code.
In the video, I explain how to install Python, open it, and begin coding.

• Download Python_Basics Notebook (.ipynb)

Basic Installation - Environments

Before working with the course materials, you will need to set up your Python environment.
Follow the step-by-step instructions in the guide below, and check the videos for a walkthrough of the installation process on Mac and Windows.

Basic Installation - Environments

For the environment installation in Mac:

For the environment installation in Windows:

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Analysis of Metabolic Networks (AMN)

Reader M3 - Pathway thermodynamics

A four-part mini-series covering the thermodynamics reader (M3).

• Reader: M3 Thermodynamics (PDF)

Lecture M3.1 - Introduction

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Lecture M3.2 - Core concepts

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Lecture M3.3 - Pathway thermodynamics

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Lecture M3.4 - Applications and wrap-up